Scaffold Ga0114993_10188767

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10188767
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1597
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F042020	Metagenome / Metatranscriptome	159	N
F094399	Metagenome	106	N
F098066	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_101887671	F042020	AGGA	MKPQFDLFESTFEEWLDELSLMNHNESPHLRSILHDLYMEGHEPLDARDALEVYHPEWHEELVYLEEHPILG*
Ga0114993_101887672	F098066	AGGAG	LVDFNDDYGKSEIDQALKYLLDNEMISMEWDPDGEEMVYYMTDKQRAMPKPNDWDTAM*
Ga0114993_101887673	F094399	N/A	MKKRQQRTPQEIIAETEARLDRLRMRQAKTSAKSDPTLAPLLAQVDDLNKEIREAKKLLGEGPQSGVARIGKHQVWIEKIELEMEVAGDTLHNAETDKAIAQVEIVKATQAYLETSKEISAEG*
Ga0114993_101887674	F007828	AGG	MLNSLTTIVRSNQNATMIRVGAGSSAIYTIYDLKTQSNTYTGTLNATKKAWNKHYRNSRQFVTKSGSNHRYMGA*