NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114993_10188767

Scaffold Ga0114993_10188767


Overview

Basic Information
Taxon OID3300009409 Open in IMG/M
Scaffold IDGa0114993_10188767 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1597
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007828Metagenome344Y
F042020Metagenome / Metatranscriptome159N
F094399Metagenome106N
F098066Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0114993_101887671F042020AGGAMKPQFDLFESTFEEWLDELSLMNHNESPHLRSILHDLYMEGHEPLDARDALEVYHPEWHEELVYLEEHPILG*
Ga0114993_101887672F098066AGGAGLVDFNDDYGKSEIDQALKYLLDNEMISMEWDPDGEEMVYYMTDKQRAMPKPNDWDTAM*
Ga0114993_101887673F094399N/AMKKRQQRTPQEIIAETEARLDRLRMRQAKTSAKSDPTLAPLLAQVDDLNKEIREAKKLLGEGPQSGVARIGKHQVWIEKIELEMEVAGDTLHNAETDKAIAQVEIVKATQAYLETSKEISAEG*
Ga0114993_101887674F007828AGGMLNSLTTIVRSNQNATMIRVGAGSSAIYTIYDLKTQSNTYTGTLNATKKAWNKHYRNSRQFVTKSGSNHRYMGA*

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