Scaffold Ga0114993_10040056

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10040056
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3781
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014809	Metagenome	260	Y
F049937	Metagenome	146	Y
F104018	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_100400561	F104018	N/A	NSGVSTTTATGTSMGNVTTMTDGVIKDITDGQLGTAFNTLSSNAIGMISSDAGRKTLVTAGGIAALGAFARKQFPQLKLGGSKLYFRI*
Ga0114993_100400562	F014809	N/A	MAVTTITRTFDATPTDKAYFSLTDNMLSSSLGNIQVPQGSSRISRVDCAFAVSNAVGYQVVCRLLGSNMSEQNFTIMGIAGDTADAAAAVGFNTVPVAFGLAGVNNIDLQIAIQFAAGGSASASSGSVTLYFE*
Ga0114993_100400564	F049937	GAG	VSLAPSLSVSRIKEGYIYGWSGTESLTSSALTLLDYTNPSEFFLTRVMLGIDWTSMAVGETLSYTLQVDGQNMFTEKIVIVDSNLGVQPKMIEFVIPPNSSVSVKATQSGNNGSISCILTGYKV*