NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116854_1067605

Scaffold Ga0116854_1067605


Overview

Basic Information
Taxon OID3300009400 Open in IMG/M
Scaffold IDGa0116854_1067605 Open in IMG/M
Source Dataset NameSoil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Community Of The Robinson Ridge, Antarctica

Source Dataset Sampling Location
Location NameRobinson Ridge, Antarctica
CoordinatesLat. (o)-66.369451Long. (o)110.585574Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038913Metagenome / Metatranscriptome165Y
F050025Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0116854_10676052F038913GGCGGVSGFWEIEAGVSPARVLGDGSEQLLVRVQIVDLDSPDPAADAFIDLPSTCARRLALEILAAADDADWQTEQNGCPGRSR*
Ga0116854_10676053F050025GGCGGMSVQDAAASIAQPAPAVPPRAPALAARLAGLFETDSEIVRVLNDAHHRLAEANDQLRSSPAGDRLRVHHQIHRAFCAYQQAAEQRRQLAVDVGELSQQLTDTLTAAGYHPEHARSANVHELAAGTWQPTEERQESER*
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