Scaffold Ga0116591_1004156

Overview

Basic Information

• Taxon OID: 3300009391
• Scaffold ID: Ga0116591_1004156
• Source Dataset Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1 SPAdes
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Liverpool
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2396
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location

• Location Name: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030418	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116591_10041562	F030418	GGTGG	MGLFDSIGTFIDRAIPIGLGVATGGPLGGVTAAFGTEQQKSRQKRLEKATSMYQNDPGLSQGFTGNMSIQPTNRDAGFFGDLGSTIGSFGSNVGQFFNDISPLTSLFGGGRSLPRTNSGTAISIDTGRPQETSQSGEILGASLGLAPALFQGARGLLRTPGGQTALGFGAGALGAAFAGNGSSAPRITRKMKSDVRRIYMMAGMDPAATAQILNNLGTYPRIDFNASVVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKNVADMYNSVCKPKPRSPRPRAAPKAVQLIKN*