Scaffold Ga0118722_1291386

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118722_1291386

Scaffold Ga0118722_1291386

Overview

Basic Information
Taxon OID	3300009376 Open in IMG/M
Scaffold ID	Ga0118722_1291386 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0137079, Gp0137080
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	916
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	234
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024648	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118722_12913863	F024648	AGGA	MCEYHLNVGDMFRTKQGLGLIVKKANGYFHYSNVGDDQSLAYQTIAIKQFYNYCDDRSHNQVLEVMLLPNRKYRRKRK*
Ga0118722_12913864	F005524	GAG	MDIGDKVQHFGTGSIGTVIDSSYEVETPFQQLCVQWEDDLAPHKDSWERREELSIIPHQPYDFTLE*

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