NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118722_1195448

Scaffold Ga0118722_1195448


Overview

Basic Information
Taxon OID3300009376 Open in IMG/M
Scaffold IDGa0118722_1195448 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0137079, Gp0137080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1238
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)234
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005620Metagenome395Y
F067209Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0118722_11954481F005620N/AKEAEDGLPVARAIGKFNGDEFFCNFKDGSIGVYAGRETQRQFTYLHKKLVKLGCIPHQIGDFEGSYDLEWMNIPPVARLLKIKKGAAKVKDPKWLREL*
Ga0118722_11954482F067209GAGMTPEDKQKELSMTDWVTKFSDGTNEMATAELAAKFMFAMSYYHERMKLHIMLHPFFYVAGFLTAYYLLE*

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