Scaffold Ga0118722_1124400

Overview

Basic Information

• Taxon OID: 3300009376
• Scaffold ID: Ga0118722_1124400
• Source Dataset Name: Combined Assembly of Gp0137079, Gp0137080
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063607	Metagenome	129	N
F099142	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118722_11244001	F099142	N/A	MSEYTDDIAEMIADLPVNYVIGVTTYTGAVNEIAKGQDAGEGGFLDDFDLSLVGKKADHGSLPAIGSKMTVDGQSYRIEKVTTTPADAAEVRFDLMSADR*
Ga0118722_11244002	F063607	GAG	MSVKINQAAFTQQLRRYAKVNKRSFKDIVNAKALDMAFQALKHTDAASASAIEYKLGAIGNKVSKSRKTGQLRKGKRILKADSFAARIVNSRRKKAGQPMIWGKDLEKAAQKLINMRVRAVKFLKSGWLPAIKKLSYAVERRDRRPWPKGLSKGKAATKGWGRPAKAELNPEAWVANSATNNSQQAISKIKAGLSRGMAASVADMAIYIEKKLGRDYRKAGF*