Scaffold Ga0118716_1023679

Overview

Basic Information

• Taxon OID: 3300009370
• Scaffold ID: Ga0118716_1023679
• Source Dataset Name: Combined Assembly of Gp0127930, Gp0127931
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4518
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118716_10236794	F016734	N/A	MNKQQREEYNAKLDKMDLSDSERDVFDHDVKRSLIDLDTYQNSDTFSLQGYNLSKVMDDIVLAQFVDLSDDGRSVVRNGIHIPLAQVQRTWRLAKVILIGPKVEECKPGDIVCFPDDKGIKVDNMSIKGYDKPLRNCIFLNEQRFFGICEELDHDNKPSKS*
Ga0118716_10236795	F036473	GAG	MITSLANLKTILLDKVCEVKFARRNPKSGRPATRRMLCTNNIQLLNSIEGRTVLNYAPPRQAPKYNPNQENLIIVWDILMQDFRTINCDTVDLISTLEADQTFWTYLNEHIVPMSAQEKIGFMNT*