Scaffold Ga0103681_1047539

Overview

Basic Information

• Taxon OID: 3300009296
• Scaffold ID: Ga0103681_1047539
• Source Dataset Name: Microbial communities from groundwater in Rifle, Colorado, USA-3A_0.2um
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Lawrence Berkeley National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2245
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Microbial Communities From Groundwater In Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, CO, USA
• Coordinates
  • Lat. (^o): 39.32
  • Long. (^o): -107.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103517	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103681_10475394	F103517	AGGAGG	MNKREVLDITADMMKKMVSYDEVETVTQRSVMRGMENGTKLMLEEKERVNKLINDILSSLDYRNVLNKITEDTFDAFVFRYFKNVKYLADLEADDIELPDMVPENSFSVWAAVMLIDIDCL*