NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103869_10238198

Scaffold Ga0103869_10238198


Overview

Basic Information
Taxon OID3300009257 Open in IMG/M
Scaffold IDGa0103869_10238198 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM22
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008512Metagenome / Metatranscriptome332Y
F037987Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0103869_102381981F008512N/ANKIETAQRKTPKGGQKERTHREEHGNLAGSVKNFQRPAMLKTTPLDCEIKSSLREKRRDPWSGANASSKAMADPRPVVKTRKRIIGVS*
Ga0103869_102381982F037987N/APGPTLRSNRDKWGMGVRHALFPEPAFGALLSEAAGFPTPFSTASGVSGLVAGPSGDLHRADFE*

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