NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103869_10223146

Scaffold Ga0103869_10223146


Overview

Basic Information
Taxon OID3300009257 Open in IMG/M
Scaffold IDGa0103869_10223146 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM22
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000203Metagenome / Metatranscriptome1619Y
F001346Metagenome / Metatranscriptome718Y

Sequences

Protein IDFamilyRBSSequence
Ga0103869_102231461F001346GGAGGVIWAGPVKTFRNAGDSQNATAGLWMKGNLRGKRRDPWHRANAPLTTAADPALSGQDANKQQQTCLGLVRKPVLQPPAQAS*
Ga0103869_102231462F000203N/ALFPMLALGAKLAASFPTPFSTASGVIGLVAGPSNALRPLDFE*

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