NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103861_10073772

Scaffold Ga0103861_10073772


Overview

Basic Information
Taxon OID3300009247 Open in IMG/M
Scaffold IDGa0103861_10073772 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM14
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092888Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0103861_100737721F092888N/AFTLRVRKNSGTIEFLAIGVCFTVISSILINAFVSGNLATRSPLCEPCSSIVLATIGFIGFFTSWKETTITVDDLNKRFTATTRNLLTRTSNKREATFSEIRNMRSTIDERTNSVKVTIAQDNQETIQFQLDCKSYGPLEKYLKTLLPKIPIISRETWFHEAGMYQGNMSPVY*
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