Scaffold Ga0103762_1004052

Overview

Basic Information

• Taxon OID: 3300009212
• Scaffold ID: Ga0103762_1004052
• Source Dataset Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 3-1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Duisburg-Essen
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1663
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Source Dataset Sampling Location

• Location Name: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016768	Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103762_10040522	F016768	GAGG	MVTTTDWTYVGEGRGGYSMTPSYNFVGEGVGAYAKEVIVTPYGCRLRPCCLILALLGLLIPLLLYFLQPPMQPSPRPIPKPVFQPLGTCTIWGDPHIRTFDNMRSDYYSPGEYWIVKSAAVWIQGRYLPLPSTSGLGVTKVIVVGGPFLKGHRLRVETRSAFWDGQAVLTGFPSDYTVPGFVDMHYNAVGELMQNGREGKALHIVHIRLEDGTPEGLQIQVNRWMEAAEGDYINVKITMHKQPDQDGHCGNFNGDPADDDRLQVRARVGKTGVDPSMLMFGTKTPVVEANRPNINDCPAQKLEEAKATCKARENKFIPSMACLIDVCFGGKGFADEK*