 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009194 Open in IMG/M |
| Scaffold ID | Ga0114983_1001183 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10520 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001733 | Metagenome / Metatranscriptome | 644 | Y |
| F007170 | Metagenome / Metatranscriptome | 356 | N |
| F012219 | Metagenome / Metatranscriptome | 282 | Y |
| F058132 | Metagenome / Metatranscriptome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114983_100118311 | F058132 | N/A | MALQSLKQIPKDTDKGLLIVDLSDVAGDGAELRFREPKAADLFPDAKELGSLRVAFAEFPEAMLYQIYLLGRCYVADPTDSSEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKEAKNALEV* |
| Ga0114983_10011834 | F001733 | GGAGG | MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTAQAQDVAELGAVMALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQVNSLKVGK* |
| Ga0114983_10011835 | F012219 | AGGTGG | MIIQNPSIVKEPAPSTDWRVFGDMYDFDGNLLGTFGPDGTSVNVWWVQQDYDFQLSIVQTFMQVMAQQIVGGTAE* |
| Ga0114983_10011839 | F007170 | AGG | MAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQDTLCGSRVFTYPTYRITVWDTATGAVSMASSATIMSRIDTLLDNIHVSSTTPRFYVRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |