Scaffold Ga0114983_1000191

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1000191
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25479
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (38.10%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F024551	Metagenome	205	Y
F026860	Metagenome	196	Y
F074557	Metagenome / Metatranscriptome	119	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100019110	F082694	N/A	MGTKSARHIVEAAVASHLTAQVELTGVNIYKGDSADTNVLPKAIVLCDSARLPNDFPDGLGNYSCTVRVTLLDSADDVTLTDHRARVAAIAGSMQDLEAMQAVFTLQGDAHCYDITPMSEDEGVNERSWASVLVYDILVVVNPEG*
Ga0114983_100019117	F021297	N/A	MSDTVTLSQGNTFACTFVWTPGATGPANLLATTLTSTVEDKCGNSYELTITKAGDGLSFTCIYPGSTADWALGLGRWDIKFAFPGGGISRTEVFRVQVIDSVTL*
Ga0114983_100019131	F026860	N/A	MTDSNSIVQRLLKELSNEPKDYPCPKGWFTVDQIRVELDMAHTRNASSRALDLQRRGLLERQPHQFKSGTGQCHMAYVYRPVPPYKSIKEAAAQMFAHRSDKVPKGWVRLVDYAVSKNVSDVAVRGRVARAGLKPKYWKTPRGIIGLHLNAYYLKADLDRLYKA*
Ga0114983_100019132	F074557	AGG	MTLVLALSAALLTSEAIPEQTLQAVEQVESSGRGASTPRGDGGKALGCLQWHAVAWKDCSAIRRKVGLAVYPYADAAVPAKARDYARTWLTVLKVRLAGKIGRQPYPGEIWLAWNLGWSGYERYGFSWAYVPRVKFDKARQVNTLAWGLPKRPAVAR*
Ga0114983_100019136	F101160	GGA	MTTPYNSRSSGISELHDLIDKFVPVREAALQEHYQKAAQTRALLKSLGCWPTDKRKPVEPRGKKPKAGKLASELGREAYHWAHKNNATYTEAAERFRVDANSIHSYRQYRKLPKLRTK*
Ga0114983_100019141	F024551	N/A	MLIVKPDSLPRFWWLYPWSVARQLHRNCNALRALADKTDDENRLLRQEVTRLAHSRDHWLAKHDRAYAVAMHNERVIADMENRSR*
Ga0114983_10001918	F085382	N/A	MSLYGSTFNSDFQSILADIGVPATVGANLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPVTSLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ*