Scaffold Ga0114971_10021893

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10021893
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4141
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021487	Metagenome / Metatranscriptome	218	N
F055441	Metagenome / Metatranscriptome	138	N
F091360	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_100218931	F055441	N/A	MHNNPTLPPTKLVLRTFTTDLPAGEVKRQLLELVEKSALFNSSFLNGEWDEDSRIGGLDQLGDIIIRHRTERAKRELTIEHRAGDEPLVVEIVTALGKALTRRPTLPVPGMNRPKGMAYFFEMIQGNPLKSKILIADAVVEAAHDLRFEDYRMARRALDFLAKLREIKRTYLTQDKETQIAYHMAQVNHPDPKVCLHEGKKVFLRNQISIKPDIDGPNLTMHFTRLPKGKLLVGWAEETPF*
Ga0114971_100218933	F021487	GAGG	MQPPTSIPLKKLQIRAYDCKLTAQKVKRALLKLVESSPAFNESWINGEFDIGSRIGGLNQFGDIIVRHRTVLRGKHELTIEHRAGDELLAKEIEAAYGKDLSPKAPRMIKGKKRPHGMAYFFETIRGASLIKNHVIITDAVIEEAHDLNFDDYREARSKLEFLGMVPRLGALHSNLDVRVQRAYKEANQLYACPKVCLYQGKKVALPHRMEAISVKHDYILTLHFAKLPGFKILVGWVEERQF*
Ga0114971_100218934	F091360	GAG	MVTGDGHGHREFRSRPFGHRVLAPGFRRLKAERLTPERLTTVAVTRHLK*