Scaffold Ga0114971_10016300

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10016300
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4857
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_100163001	F021113	N/A	NILAALLLFIGTSILWLVLCWNWWGCTRKKNVQENVQKQDSIINYNAGEYDRLLTEQIELYKQLRTYEDAQLTAKTTYQRTRSAIIIRDTITIVDVIHLVNSCDSVIASDSLVINNLKKQINIEEQKIDNLQEVVVAYEQKENILTEEINTLNADKKKLEKQKKRRNHALVVTSSVAILSTFVLSILL*
Ga0114971_100163002	F019140	N/A	MKNIPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKPNEDGREQN*
Ga0114971_100163005	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQNKQLKEKEMAINDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKIINADTFTEEEYRLCKENAKKNIYFEQQLVQSMVERMSDRKRQLLKESIRFEGMRELYKLYLSKQ*