Scaffold Ga0114971_10000444

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10000444
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26871
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019762	Metagenome / Metatranscriptome	228	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_1000044418	F043407	N/A	MARTPSQAVVGINKHGLYGAVPPGMTVGGVLPVGQVYTTNTTAGKFLTSGSNGTNWTTGAITTPYDSVMVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILERKHPKLKKLYDEYITALGKYRTFESIKGDE*
Ga0114971_1000044419	F019762	AGGAG	MDLHESVAHTRKEMTVKESDGFRVRLVKHEVISPKGLFSLDIIQESLKDGKVADSQTYNFFMNKEELQSLAHGLTA*