Scaffold Ga0114976_10118623

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10118623
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1498
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011647	Metagenome / Metatranscriptome	288	Y
F028457	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_101186235	F011647	AGAAG	MSSGQRKRHDGFNKSIMRDGMIVILRKDGREKTRLDPKAKELTKGTK*
Ga0114976_101186238	F028457	AGGTGG	MSKKDSVALVWCDNGMVDGKFMQGVADVMLKSGIEFATTLRSQGNQIARQRQTSIDYWYDKTPHEWLLWIDSDVVISPE