Scaffold Ga0114974_10117942

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10117942
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1691
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023834	Metagenome	208	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_101179426	F093528	AGG	MKEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSRITLSSDVPDKAVNDVVKEIQEEAGE*
Ga0114974_101179427	F031792	AGGCGG	MGYEPELNDPIFYEEEEEREIKCFSCSDPLDQDDIVWADCEGQWQVRGKEGNDTAWCVSCLPSEKEKGNE*
Ga0114974_101179428	F023834	AGGAG	MNKEYWQAKAELCRDLALIQIEDEDTEKDAGMNLMRMTYALSMVDVYSEGQGENE*