Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10032247 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009183 Open in IMG/M

Scaffold ID

Ga0114974_10032247 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3612
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3612

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F063704	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100322471	F028175	N/A	MAITIDDQPYQYTPVGQRLMLVASSTNVANAGFRFVFDFGGFTINVQPNVQNVGMLDLAPIFRESLQHDSSSVPNEGINQEYTSVANISCTIKEGWLIDGVFTPTNTGSVTIEEVYAFLAEYQVADGYKPDPNTRYALNSTNKYLLSERTTDTHKWIEAASRGLSNDYVYIPTRLTDWGQLYSISNSGFLVDSIATHLIVLTYDNNDALIATVNYTLFTNGDTVSRLGAYPANLITDGLDFTNVKYYTIQAGEEILFPVYTPASRVYCFYIVPDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNAGSFGFNIHDRGMTDRYVTTTKGLQINSDWVSVGEFELLQTLCRSNDVYIINDDGSITPVLVDTQNFVIKDERYSKLYNVTLN
Ga0114974_100322472	F036240	AGAAG	MPNEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNFTNAVASGTLEKSLAYRLQIKGSSINISVYAKGKAGQYFLFREKGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQKAIYDWMSIKGIRLRDTSSGKFKKSTEELKQTVAKLIMFKVRRDGIKGWNAFGYAMENVWDEYESKVVAAYGKDFNATIENQLKDIQ*
Ga0114974_100322473	F063704	N/A	MIITKYRMITENGYIETLNKQEAIEWGNYEVVTEEVPDDNA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114974_10032247

Overview

Ecosystem & Geography

Associated Families

Sequences