Scaffold Ga0114974_10001644

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10001644
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17579
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (30.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F042335	Metagenome	158	N
F056542	Metagenome / Metatranscriptome	137	Y
F073149	Metagenome	120	N
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000164411	F073149	GAG	MPNYYNRTNPSDLRDLAQSLIDTWEESNNPKLQEWIIAPPKPSPNAIWDNGQWVIPPLPTYTAEQWLTKEGYGATQLVTLLDLYATLTEAGKTSPKLNTVKAWTNAILGEYVQNSQPKEDWGTAPFTFNETVVEAYQELGIKILD*
Ga0114974_1000164419	F101028	GAG	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVAESVNRTFRGGINRTRPSIRNIPILAGAGQDETIVNDILGGSFQGSYPYRATNYRTSDGLLLSVSGIIYFLKIVNNQAFAYKIIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNQDYCEIVSVGTTNFTLIGAPSNTVGTKFNAVITDTQRGTGTGTIKIPAYRLNPYLAKMPIGTIMEYAFGRVFVADRVNNIYASDIIYGGGFTDTKNTENFTEITYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVILTGNGAFSMDVSLPRAQWNTLNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVQNDTPWLKQFASTMFFNNYIISTVAPQTYRAAGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGFRPTQLLTALIAAEKRGFGFSFDKDNKNRLYEFTTAQGDDYGPNGTRQIDSFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGVVDSYVDYRADSNPCWSELKVPTSYGCNPCSPKVTECVPQKNGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVHLTGAATVDRVRLMANIKNNDDSPVGDCPEENEECEPFLCCQEKYWGYNIVN*
Ga0114974_100016442	F042335	N/A	MNDNATSHGVLGTIISTTGFIVSMLPEIEASIRIAGGIISIIAGVLTCIYMTKQIIKK*
Ga0114974_1000164421	F056542	N/A	MTPLKGTDPRLVSGGAPTRGKIGTPMGNNNPPNTGTNPYSSAPLPKSGNPVGSK*
Ga0114974_1000164422	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRNWTTQEEYVQICCVNGCFTLPARYEQIRLAWVGDEAASLADEWFNQTNALALRPDQSCHRGITEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRAVTKPVTKGRIRVYAYDTALQAKTLIAIYQPNDAHPTFRRFTAPSTCECITLYASRKYYDLTDPKELLEFSPDAMIYAVLALNARENRKADEFLKNIGIAVQEQEKEMESAEIPTCGTLRISNFSRAENLIGSDLLSPSPNDYFLYR*