Basic Information | |
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Taxon OID | 3300009183 Open in IMG/M |
Scaffold ID | Ga0114974_10001640 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17591 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004475 | Metagenome / Metatranscriptome | 436 | Y |
F007112 | Metagenome | 357 | Y |
F008305 | Metagenome / Metatranscriptome | 335 | Y |
F011077 | Metagenome / Metatranscriptome | 295 | Y |
F034566 | Metagenome | 174 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114974_1000164015 | F034566 | AGG | MSFKLKSIIWVQSALIVILSVFMLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSTGGTNYDPLNTYSYRIRP* |
Ga0114974_1000164017 | F011077 | GGAGG | MHELMDTNLTWAEEDVNLWKGWTYSIEKNRYYFNDIGDESLASFWADDFLNQAYL* |
Ga0114974_1000164028 | F007112 | GGA | VHTLHYIAVEADSKQEAFDKVVVSLQSNEDGYRLADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVIGYAENKEKFQEVVKDILRFRSQTMNRNIVEIKTDKFISQMVDYASEGGRGPWNGDTLMNVYSIKQAAEMLMGSWTSDSGFYDLQEHVSEFEYLDERLDKPDRAVRQYLVPVDFHF* |
Ga0114974_1000164032 | F008305 | AGGAG | MLGYTYKDIQEFGNSLTVAIDSATDPKVKQGLLTIWDFFEGLLAEGYIDENTYYG* |
Ga0114974_100016406 | F004475 | AGAAG | MSNWTEELSDEHKEQIWHFIVETVKEIREQIAQDIQGTSDLWKAKGLNKSRRTTKAFEISAAIARGQNEI* |
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