Scaffold Ga0114959_10047921

Overview

Basic Information

• Taxon OID: 3300009182
• Scaffold ID: Ga0114959_10047921
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2495
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F018716	Metagenome / Metatranscriptome	233	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_100479214	F043407	GGA	MAHLSTTNKSSNGLIGSTVNIGYGSAIPPATPLTVGTVYPAGNGSAGQIYTTNGTSGTWSNPNQLGDNVLVAKNNPPSLEVNGRMVINGVDLEERLNTIERVLTIPERDVKLEKKHPKLKKLYEEYIQALAKYRTFEAIKGED*
Ga0114959_100479215	F009462	AGGAG	MELHESIKNTYTETVIKENNAFRLVLKKYEVLSPKGLFSVDLEQQCLKDGEITDTSVYNFFMTKEELTVLANGLTA*
Ga0114959_100479217	F018716	N/A	MQNLTIRILWDNQGVNWWNECCASVLEVFGLPGNRFVYKPYEDYMTFTFKNQKDYDLCQILLSEYI*