Scaffold Ga0114959_10025520

Overview

Basic Information

• Taxon OID: 3300009182
• Scaffold ID: Ga0114959_10025520
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3673
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F082075	Metagenome	113	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_100255202	F082075	GGA	MHVILRFRLPDEQTELNAAMQGREAKGVIWSVDQYCRNILKHGEPSDEVRKHLEWVRDMLRERPGLLDD*
Ga0114959_100255205	F102439	N/A	MGDYQPPLFAVNELPPQREKRRRMPTTLSPHLRKWLTKLARIGARISWTIELLYDPSKGGQGELCERARAGDHTLVLDTVRDGEYQMSQLGEDIEVFMRPPDRLPSEPGKPERVEAMARRRAAKMQIFDE*
Ga0114959_100255206	F070923	N/A	MQKPARRAAHACFICRACGQEVTVSDAPAGMLVHLRGRLRDEIGPRAVKAGRAFDEFVDAAARCWNCEHWTQLARTQPESEMQAVRDIQVLMAKVGEDVEAMWGASPELRTLYADVGREAVEVFARMWFESMPNRTWMRTACREARKV*