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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009182 Open in IMG/M |
| Scaffold ID | Ga0114959_10000825 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28904 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (76.92%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F048854 | Metagenome | 147 | Y |
| F050233 | Metagenome / Metatranscriptome | 145 | Y |
| F053996 | Metagenome | 140 | Y |
| F074591 | Metagenome / Metatranscriptome | 119 | Y |
| F086842 | Metagenome | 110 | Y |
| F095177 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114959_1000082524 | F050233 | N/A | MGILQLGQYAGAISAIALLVGMFIKWAILKPIKLYIDQATYPIHPAANGGRSLADVAQTVNRIETRISDLDYRLNSIEELVTKPATRTKKHHPDRLAP* |
| Ga0114959_1000082530 | F048854 | AGG | MADEKENKDNMIALRLNNEQMLAVKQWAHQHNANISQVIRSAIELMTGAKQ* |
| Ga0114959_1000082531 | F053996 | AGGAG | MRTPSEQLVQTTWMAGNKLFANHDAVTPVDWAKVWEIVDNIDQPEFDEHQLVMVAVLEFLCGSEMVEVSLDEIANLPELERQAVVDALRLKWSKVELQENL* |
| Ga0114959_1000082533 | F086842 | AGGA | MNKADVGKVLAIASAIDARLGAADEAGFRAKVEGWSLALSESMDFEFARDAIGKHYKNSTDSLMPAHLNAMWNSHRSRQHEIDNVRAIGSSPKSQGMPDDVRAKLVELGLKRP* |
| Ga0114959_1000082536 | F074591 | N/A | MRNWNWTPRAKFIGESIIAFATIAAIWIFFVGTWFALGGN* |
| Ga0114959_1000082537 | F095177 | AGGTGG | MGFVPFGMERASLDDKHKIRKMLEYIGITHPAHQVEFMSALLDKPFNTSKMTRQDFYTLVTKIQNIQENRNKA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |