Scaffold Ga0114969_10270809

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10270809
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1013
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F031792	Metagenome	181	Y
F037113	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_102708091	F037113	GGAG	MSKWTVWVGGSEINWQHYAYKIDADRIAEFWREVKGYDDVIVEEVA*
Ga0114969_102708092	F031792	GAG	VGEGRLMSYEPPLNDPDFYEEEGEAEPTRCFRCSNGLEEDDIVWANDEGQIVKEGNDTAWCVACLPSEGESK*
Ga0114969_102708095	F011484	GAGG	MKELEQFLNVEAEWVLERLSTGTESNDRNYCQGRLDQLAQVRRLLNLPQIMRGGE*