NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114969_10000323

Scaffold Ga0114969_10000323


Overview

Basic Information
Taxon OID3300009181 Open in IMG/M
Scaffold IDGa0114969_10000323 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40594
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (76.19%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F001515Metagenome / Metatranscriptome679Y
F005558Metagenome396Y
F018164Metagenome / Metatranscriptome236Y
F018698Metagenome / Metatranscriptome233Y
F036663Metagenome / Metatranscriptome169N
F055673Metagenome / Metatranscriptome138Y
F060854Metagenome / Metatranscriptome132N
F070030Metagenome / Metatranscriptome123Y
F073288Metagenome / Metatranscriptome120Y
F078625Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0114969_1000032315F018698GGAGMADNYEYEIEDDEDYSGSDLVKKLRKQIDGLQKSLKEKESLIEEFTTYSHESSVGEILESFGLNPRIAQFIPSEVEADADAIAEWLNEYGDAFGIEAVEEGGEASSDAQAYEHMSSLDDGNIDPYVGQDLQSRIGNAGTKEELMKLIQG*
Ga0114969_100003232F000368AGGAGMNAKFQAAALSWFRAAASAAVALYLVGETDLKTLGMAALTGFLGPVLKWLDQSSTDFGRGVE*
Ga0114969_1000032320F055673AGGAGMRVLKKFEENLEYLGFDLAPLAWDIAKMQFPSDDDRLALLEELTVKKEAAPGVNDGMVE*
Ga0114969_1000032324F078625AGGAGMFGKQGKMTKAPTSSAIMGKKPAGKGIGLGQVDVAKAPKTIKGSKNKLK*
Ga0114969_1000032334F005558AGGAGGMTNDSISWGELAELTHQIQVERFQFCMCEDNEGNENPYADCPKGEGNE*
Ga0114969_1000032340F070030GAGGMIHIASVVLICAYCNAEIERRTELEATEALAHHQQYVQCIKNY*
Ga0114969_1000032341F060854N/AMARPRPTEIKLVANLLDPDNTNSESASELALEIIEALDVSRGKRDSYVLVAQLARWAPVQAWGEFNTQLQAEKFVKHLTAVDIEGDGGRALIVHLEQPEKLLERIGESKK*
Ga0114969_1000032350F073288N/AMGIATAMALVSPAQALSPILTQEVRMSVMTKEQKVEYAIAQFVTEKEQRLCAKRIAYKESRYNTDSFNKSSGARGVWQLLWGKPHWSILKQTQEAHKYVLHRYDTWCGAYRFHQERNWY*
Ga0114969_1000032354F001515N/AMAVENLSSFDLDFRFGQEGESLVNQLLTEGGTVEVKRDRKWWSTNNLYIEVECWYRRSQNWEPSGVMVTKAAYWAFVLERGVLMVPTGHVLYAIKKFGREITCEIPPNRSKGYLITVENLLDVMKELKND*
Ga0114969_1000032360F036663N/AVEDNKLIPLVSLGERNELVNQVRLALNVAGDDVLDAPLAELLRGLQHRLSIPAVGCINIATLDALAVAPPEW*
Ga0114969_100003239F018164AGGMVMAKIFRGPTMRIKLGMQNDLWFVSYPWGKTVVKDNGIWKTIVSPQDSSLASYQKVLRGGYDNPITDAEAAELTAAGYGDYVVEV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.