Basic Information | |
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Taxon OID | 3300009181 Open in IMG/M |
Scaffold ID | Ga0114969_10000323 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40594 |
Total Scaffold Genes | 63 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (76.19%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Associated Families | 11 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000368 | Metagenome / Metatranscriptome | 1223 | Y |
F001515 | Metagenome / Metatranscriptome | 679 | Y |
F005558 | Metagenome | 396 | Y |
F018164 | Metagenome / Metatranscriptome | 236 | Y |
F018698 | Metagenome / Metatranscriptome | 233 | Y |
F036663 | Metagenome / Metatranscriptome | 169 | N |
F055673 | Metagenome / Metatranscriptome | 138 | Y |
F060854 | Metagenome / Metatranscriptome | 132 | N |
F070030 | Metagenome / Metatranscriptome | 123 | Y |
F073288 | Metagenome / Metatranscriptome | 120 | Y |
F078625 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114969_1000032315 | F018698 | GGAG | MADNYEYEIEDDEDYSGSDLVKKLRKQIDGLQKSLKEKESLIEEFTTYSHESSVGEILESFGLNPRIAQFIPSEVEADADAIAEWLNEYGDAFGIEAVEEGGEASSDAQAYEHMSSLDDGNIDPYVGQDLQSRIGNAGTKEELMKLIQG* |
Ga0114969_100003232 | F000368 | AGGAG | MNAKFQAAALSWFRAAASAAVALYLVGETDLKTLGMAALTGFLGPVLKWLDQSSTDFGRGVE* |
Ga0114969_1000032320 | F055673 | AGGAG | MRVLKKFEENLEYLGFDLAPLAWDIAKMQFPSDDDRLALLEELTVKKEAAPGVNDGMVE* |
Ga0114969_1000032324 | F078625 | AGGAG | MFGKQGKMTKAPTSSAIMGKKPAGKGIGLGQVDVAKAPKTIKGSKNKLK* |
Ga0114969_1000032334 | F005558 | AGGAGG | MTNDSISWGELAELTHQIQVERFQFCMCEDNEGNENPYADCPKGEGNE* |
Ga0114969_1000032340 | F070030 | GAGG | MIHIASVVLICAYCNAEIERRTELEATEALAHHQQYVQCIKNY* |
Ga0114969_1000032341 | F060854 | N/A | MARPRPTEIKLVANLLDPDNTNSESASELALEIIEALDVSRGKRDSYVLVAQLARWAPVQAWGEFNTQLQAEKFVKHLTAVDIEGDGGRALIVHLEQPEKLLERIGESKK* |
Ga0114969_1000032350 | F073288 | N/A | MGIATAMALVSPAQALSPILTQEVRMSVMTKEQKVEYAIAQFVTEKEQRLCAKRIAYKESRYNTDSFNKSSGARGVWQLLWGKPHWSILKQTQEAHKYVLHRYDTWCGAYRFHQERNWY* |
Ga0114969_1000032354 | F001515 | N/A | MAVENLSSFDLDFRFGQEGESLVNQLLTEGGTVEVKRDRKWWSTNNLYIEVECWYRRSQNWEPSGVMVTKAAYWAFVLERGVLMVPTGHVLYAIKKFGREITCEIPPNRSKGYLITVENLLDVMKELKND* |
Ga0114969_1000032360 | F036663 | N/A | VEDNKLIPLVSLGERNELVNQVRLALNVAGDDVLDAPLAELLRGLQHRLSIPAVGCINIATLDALAVAPPEW* |
Ga0114969_100003239 | F018164 | AGG | MVMAKIFRGPTMRIKLGMQNDLWFVSYPWGKTVVKDNGIWKTIVSPQDSSLASYQKVLRGGYDNPITDAEAAELTAAGYGDYVVEV* |
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