NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114979_10014609

Scaffold Ga0114979_10014609


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10014609 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5059
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F078229Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0114979_1001460910F032548N/AMNYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEEASEFIMEHKNAK*
Ga0114979_1001460911F036564GGAGMKLGRISLDLNYIVDMDNEDMVRHATEALYEDLMQGIKYGDLANWIRISEDKDAKEDMIPEFLLEEQND*
Ga0114979_100146093F034827AGGAGMKYVISSQDKEAMIDFDKLKEGEVFSFFDPESVQRGNHSIYMKIRVPNFTGANIVDLDDGKAYSFSDKKRNTINDPDEKQGNKVYKLNAKINIVII*
Ga0114979_100146094F078229N/AMNKIKYTYYVEQDKDKDGNYVQSFSIYKVPVVKTIRLKTFKKLKDANNFLDTYESN*
Ga0114979_100146095F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRRDNYPNVDFIDAKLLKTFPSPYHARNWMEYDGKRTY*
Ga0114979_100146099F027756GGAGMKLKDLIDRKILFINFPINRHAIQEGKVSEISPAEKCIKINNDWHLINNIRIIELFSKDERPSLGFN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.