Scaffold Ga0114979_10001942

Overview

Basic Information

• Taxon OID: 3300009180
• Scaffold ID: Ga0114979_10001942
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13973
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F012435	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114979_1000194211	F012435	GAG	MSDIDLVKYGVLWQKVESMEAKIDKMEAQLETLIELANKGRGGFWMGMVFVSAISTILGYVSHQWSK*
Ga0114979_1000194212	F000332	N/A	MRWLILLLLFGLVAAIAKNGCHVREFYGIAYTVHDPTQRHKEMMTWLNQNAQHCKSTDYVVIWNNLSEWAGAADSTWLRNKVVHGYKEALEREKK*
Ga0114979_1000194213	F002933	N/A	MIPPLYKWYPMIQPGGEPNRTDALERRAEKLTEDYKQALKMKKVDIKIDALEFELYVKKAERNQISLEIFTNRKVDISV*