Scaffold Ga0105241_10005507

Overview

Basic Information

• Taxon OID: 3300009174
• Scaffold ID: Ga0105241_10005507
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9365
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014858	Metagenome	259	Y
F026499	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105241_1000550712	F014858	GGA	MSTSEKRDPRPVSQPQTGHSRLSLIGRHTGLLAVAIFGTLLSAKIWVPVAFFIVDTFPVNPALAGAALFIACVVFFLCIFGVGKRSRVIGLVSRVILLFLSVVAAIASMEAISFGLISVTVTASREGFLWVSIAIVLVALAALGLKTSLDWRLSYWIVFPAVFATLIFATFGLSLLSFL*
Ga0105241_100055074	F026499	GGA	MKFIEPAFDTGGDLWRPPLNVPDSDAHALNEKFARQSAELRLRLTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIILLESEKAVLQAQLDVALEESKTLADRLHAAEAASDRREATVASSIRQIEFLNTELTAAAAERFRLVATMQGEQRRQRSVFSQQKSILEDKLQEKEALAATQGTKIKQLEGVRDELDKRVRVIEALLASEREVAERKTRRTTEILGAAG*