Scaffold Ga0105241_10001878

Overview

Basic Information

• Taxon OID: 3300009174
• Scaffold ID: Ga0105241_10001878
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15929
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012660	Metagenome	278	Y
F101580	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105241_1000187816	F012660	N/A	MQKAESITERDVFASKTKEQKGNEMHRAAINLIAAVERSDHGFADVPPDSINDELEGDLAAWGYACAKSDRLWIGGYRIHSPESVRAGNYRPYVPPSIFTCALSESAHVPDAGDFDLNAILEVRGEIPKN*
Ga0105241_100018787	F101580	GAGG	MNPNEYLLKFFAELECLVDGHGTRHAVSTTVDGTLEIRLGAGDWYRAVQIVLDEDPIKAAHDVAKAETYWPTEI*