Scaffold Ga0114996_10295601

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10295601
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1269
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_102956012	F051547	AGG	MIDPLLIVTISVIGGAILNTVRGFLGSDETTYDIKKFFGALIVAVFAGIAVAQTLTVAGLGIVEVVLIGLSVGFAVDFAVSKAKKTE*
Ga0114996_102956013	F060433	N/A	MEIFEPLLIASLLGIGGALFAFFRKMSATQNDLCETVARLQKTLIILAKAVDRQSNRLHPKTANSELDDLVKELLDKP*
Ga0114996_102956014	F071758	N/A	MDEKCKNCKINKYGYTDGQHSIFICFKCGRYDGISGGDNDFIDKINEEPMALLMMIQEKILTPISGT*