Scaffold Ga0114996_10215398

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10215398
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1541
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y
F102085	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_102153982	F051547	AGG	MIDPLLIVTLSVIGGAILNTVRGFLRSDETTTYDIKKFFGALIVAVFAGIAVAQTLTVAGLGIVETILIGLSVGFAVDFAVSRAKKIV*
Ga0114996_102153983	F060433	N/A	MEIFEPLLIASLLGLGSGIFAFFRKISSTQKDLCETVARLQKTLIILAKAVDRQSNRLHPKTANSELDDLVKELLDKP*
Ga0114996_102153984	F071758	AGGA	MEEKCTSCKINKYGYTDGIHSIFICFKCGRFDGISGGDPTFIEKIQEEPMSLLMMIEQKVLVPIS*
Ga0114996_102153985	F102085	N/A	MATSIYIFDSDKMFNSIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVLHDKVRYNHKKNQLEFFPRKLRKPLLSMRVGRYFGYKKGKCNINYDKRYYDFKNDRMLFILENKNEV*