Basic Information | |
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Taxon OID | 3300009173 Open in IMG/M |
Scaffold ID | Ga0114996_10215398 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1541 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.2588 | Long. (o) | -156.0227 | Alt. (m) | Depth (m) | 208 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F051547 | Metagenome | 144 | N |
F060433 | Metagenome | 133 | Y |
F071758 | Metagenome / Metatranscriptome | 122 | Y |
F102085 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114996_102153982 | F051547 | AGG | MIDPLLIVTLSVIGGAILNTVRGFLRSDETTTYDIKKFFGALIVAVFAGIAVAQTLTVAGLGIVETILIGLSVGFAVDFAVSRAKKIV* |
Ga0114996_102153983 | F060433 | N/A | MEIFEPLLIASLLGLGSGIFAFFRKISSTQKDLCETVARLQKTLIILAKAVDRQSNRLHPKTANSELDDLVKELLDKP* |
Ga0114996_102153984 | F071758 | AGGA | MEEKCTSCKINKYGYTDGIHSIFICFKCGRFDGISGGDPTFIEKIQEEPMSLLMMIEQKVLVPIS* |
Ga0114996_102153985 | F102085 | N/A | MATSIYIFDSDKMFNSIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVLHDKVRYNHKKNQLEFFPRKLRKPLLSMRVGRYFGYKKGKCNINYDKRYYDFKNDRMLFILENKNEV* |
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