Scaffold Ga0114996_10136180

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10136180
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2037
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F022282	Metagenome	215	Y
F062169	Metagenome / Metatranscriptome	131	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_101361804	F105878	AGGA	MKVGQIIKINKSGLAQFAPGIRAKLEGEIGLVIQEKYDLSHKLDQDKLPDRVKVYPSLVRFESLQNMNFLDMGAVMVFPDQAEVLS*
Ga0114996_101361806	F006867	AGGAG	MPLRGKELLKKIQSRCRIKPGMLVNSNAGTEVNVIALVTALSPSCEFEQDYEEAEEHIFYKCEPIDGTPAFVDYVCNMEQVS*
Ga0114996_101361807	F062169	GGAG	MPVQEHIKNILGAVGQGALDAWYIAINEHPQNAMEIHDVVVDHLVENSFMY*
Ga0114996_101361808	F022282	GGAGG	MPKFYFRLDLGDLVNFKASRVTEDYMDDTMLTGIIVEQRYVFTADNRYKVRTGDQDYWVGEDKLTLISGTKNKT*