Scaffold Ga0114996_10060062

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10060062
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3375
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F006146	Metagenome / Metatranscriptome	380	Y
F022429	Metagenome / Metatranscriptome	214	Y
F033079	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_100600622	F004843	N/A	MKWILIIAIALSFSGCARDATAEDSTEVTPAEQSLEKTTLTGKTNTEWIAIVMTWNPVVYTIDKEFTSEVNCWNYYDNGAGETKMLNSYGTQVLDHQGNKPDKDYMNKNRPAHRVYPTRMYKNHGGLLVWLTCDLRSRHLEL*
Ga0114996_100600623	F033079	GAG	VVIEDKSIEISGNRLVWRHIQKENQKMILDPLGYDPLRDIDEIHHRNRRKTDDPYIKATRKKIAHHFPEINDAERR*
Ga0114996_100600626	F006146	N/A	MIIATTTLIIVQVVVVGCVLWMNPEPCPRKYRVTQEQGGVLANMSDIHRYCELDYGGKFMLKEEFIEEINDAQQRLKD*
Ga0114996_100600628	F022429	AGG	MSIGFREIWNGPSFLNRKPSALRMAARDGEGKKKREKSGKLKAREHFAKDWDVDLWD*