Scaffold Ga0114996_10035396

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10035396
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4710
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F016759	Metagenome / Metatranscriptome	245	Y
F094574	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1003539610	F007837	N/A	GLSVLPKISARNLDLKLNTVTDLKTTINPLIVNYAAQYQSLSNSIMIDNQDAANAVTVRLNRSTNTITIAGGNFRTFNDAWIEQIDCTGASTNTQVTSQISPLTQISPYGQGVTN*
Ga0114996_100353962	F016759	AGCAGG	MSMEPIQRLMQNPAALAAGVPQLMLDAVTNLSFIQANIPNIILDIFNSPDPLATNFYTDTLQKNSISTGRSFFTSSMSTTSAGRAAVGPIRIASGQIQMESNATSVAAGAAINDNSIVIKFANGF*
Ga0114996_100353966	F094574	N/A	MYDRFKQIQLERGKNATIRLNELIEREVKEADPQFKELNAVRSKDAPDIIIPNPFLMDQFHSLPIWVEYMQTLTKAQHEILYQHIIALKLTTNDFEDHLDKDDLDRLDR*
Ga0114996_100353967	F013596	N/A	MEAFVESLTILGIVLSMSISAVLIAKIYRKNSALDPKITNKLRKQQEEYIAELEHGKRKLQNKLNSMQKGPELSEIGDLDGVLPDLIGQLDGILPKWASKFIKGQPDLINTVIEYAKSNPDKAKELIGRFVKIKPTTKAVSDDSLQGL*