Scaffold Ga0114996_10005787

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10005787
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14440
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (54.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F017721	Metagenome / Metatranscriptome	239	Y
F030785	Metagenome / Metatranscriptome	184	Y
F041248	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1000578712	F007055	GGA	MTWNPVIYTIDKEFSSEVACWNYYDNGAGETKMLDNYGIQVLDHQDNKPNKDYMKKHRPAHRIYPTRMYKNFGGSLVWLTCDIKGRNEGL*
Ga0114996_1000578718	F041248	N/A	MKQHGKRARQEGAIERTEASILVYEKNLKSSKDDDEKKLLKKKIERAQTTIKNTKII*
Ga0114996_1000578721	F030785	AGGAG	MKKKTATIEILEKDEKVLGSRTRGEYMVRRYEDGIEMSGEFFYTLAEAGGAIREWEGIV*
Ga0114996_100057875	F017721	GAG	MSFREIWNGPSFLERGDAAYRMRARDNAGKKTKKTNKHITHEHFNKEWDKDLWD*