Scaffold Ga0114995_10035853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114995_10035853

Scaffold Ga0114995_10035853

Overview

Basic Information
Taxon OID	3300009172 Open in IMG/M
Scaffold ID	Ga0114995_10035853 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2886
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044157	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_100358535	F044157	AGG	MNILHNFLIPEAEHRNAYWAKQPINDPGTLNGFKGTFAFSEHSRIPQGIVEFLLEHFHKKCFKTANSWKKNHIEAIPLDEINELMNELWDGPGSMIKIARLTNEMRIARLWDDDDED*

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