Scaffold Ga0114995_10031949

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10031949
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3078
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F025595	Metagenome / Metatranscriptome	201	N
F033113	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_100319493	F000896	AGGAG	MTNKINLVINMSILALLIYLSVAVKTIQDEVFPDPNIMTPMNMGYDNSAELRYNIQELLNNVLRDAINQTGEQ*
Ga0114995_100319495	F000302	AGGAG	MTAQTMALDTKEKIRDLEGQKIILEDRMEHLGYASNLVKMHEIESEIFEIEDTIKKLIS*
Ga0114995_100319496	F033113	N/A	MKYKQLTQGVEQMDNSKKYQRQIVIFIEGIDGIKRHEFVHGTLYLKLEEDRDCDFIHTEIRKFYKGYIDPEGGVNMYAVGDEFAFDFVPADRETPAFADEEKGVWSEFAEEELLNNMPDEVDVMLNLEADAKEGK*
Ga0114995_100319499	F025595	AGGAGG	MTVRYNFNGMSNRLEVLTSIKENIQDGDTDTAIDMINQMIELEPQPEEAKPVADALDHHQIMQKGIVR*