Scaffold Ga0114995_10003419

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10003419
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10776
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F010878	Metagenome / Metatranscriptome	298	Y
F022084	Metagenome	216	Y
F035272	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000341918	F010878	AGGAG	MKITAWNIGIVWEDGTEENIGDVPDWVANRVDEFLNELEEVDDD*
Ga0114995_1000341919	F035272	AGGAGG	MTYKQWCNLRELLTTLNDEVDSKVCDDKVSEAFDDVWDMVDEIDTRQEIT*
Ga0114995_1000341920	F003976	AGGAGG	MSRTYNDYYFEKLDILDTLDKLEMSVRFLNVWVKEPMGLENAKYILEKNANRKFNWFDMDMIKDIVNTEGGV*
Ga0114995_1000341922	F010571	AGGAGG	VSNATMQTYIDKLYEELYEKYYEEVGKTTDDVEYIEKEAERLAEIDLDNLEMEG*
Ga0114995_1000341924	F022084	GGAGG	MEHTEYLKRLFNHIESKGYTIECECEGEDITKDDALTQVDEAVIYIIDKDGHSLGWIHWTYWNDWDESISDYTLELEKILELDKFIDGIMKEVA*