Scaffold Ga0114995_10000261

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10000261
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36011
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.34%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000026111	F006666	N/A	VNPKSHKDLRKGIADEVGVHPTVVDDFISFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAQSEDIHKNIVEMESAMKQLEKDIKIKKKFRNER*
Ga0114995_1000026112	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKSIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLIKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS*
Ga0114995_1000026114	F005243	N/A	MTDFKTNENLQDKDPKMSKKEMAERREEITAFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMYMAQQYAAQKGEGAPDPESPEGKAFQDAMAKAMTNETA*
Ga0114995_1000026143	F002047	N/A	MKQKISLPEVVSKDRDALVRKGFLDLNEGQYTMTPQALAICGTLDSYFIKAKKKTDIQLMGKDFVEKINDYREVFPARKLPSGKPARNNVKALGEAFRWFFETYDHTWEEVHKATRMYVNEYRDADYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEDEHFKETVV*