Scaffold Ga0105097_10026862

Overview

Basic Information

• Taxon OID: 3300009169
• Scaffold ID: Ga0105097_10026862
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3062
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017818	Metagenome / Metatranscriptome	238	Y
F047649	Metagenome / Metatranscriptome	149	N
F072267	Metagenome / Metatranscriptome	121	Y
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_1002686210	F072267	N/A	MTEKIGYKLNPKKLKGAPQGILPYVVGAFYYTEDFEYFDVIKPYLDIPEPPKSLEEIQKELDEKIDKRIEDVEYKFAQLKCYQEYQYNQKFDRIFEKFEYAKEHGQFPSKLTYSNLIATGSNITSTFVIKQGNKHEGYYTIGNGYLRFYMPDKPNAITRWFMKNCLSFIWVDEK*
Ga0105097_1002686211	F047649	GGTGG	MRYYETRTYEHQCDFDAKNRAQKASQDYYNKWINLRKEVRNLVREQNLTITSDFAKLIGLK*
Ga0105097_100268622	F017818	GGAG	MNKDEYYDWIDENDAYPKHSHKFIVGLYTPDGGRFDMLHRYFGPFDTREEAKIFAANYKDKYTKPGFISRTKIFPLCEVVKDT*
Ga0105097_100268624	F090316	N/A	MPDDLQREEEIFLKALEEHKEKKSQEPKDKTTNTLPAVIAAVL*