Scaffold Ga0105097_10000748

Overview

Basic Information

• Taxon OID: 3300009169
• Scaffold ID: Ga0105097_10000748
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15125
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F041777	Metagenome	159	Y
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F063704	Metagenome / Metatranscriptome	129	Y
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_1000074812	F071250	N/A	MKKLVSLEKRVENLLKKYKTLRNNNKALCVKVWEQQFEERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHVVNKKKEQLIKPLLKSKQ*
Ga0105097_1000074818	F041777	N/A	MKKTLLFIALLFGAMLIAGSIDESTRQLEQTPNHTTK*
Ga0105097_1000074828	F046371	N/A	MSDNKLNFLKSQISAFNPTWKKEQIEMEAIRIYNEANTIDDDDEGCLYCGS*
Ga0105097_1000074831	F063704	N/A	MIITKYRMLFENGYIETLNEQEAIEWGNYETITEEVPDEETNG*
Ga0105097_1000074832	F036240	N/A	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGKNFTNAIASGTLEKSLKYRLQIKGKNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQKAIYDWMTIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWHAFDYAMENIWDEYEAKIVAAYQKDFTATIENEFKDI*
Ga0105097_1000074833	F028175	N/A	MAITIDDQPYQYTPIGQRLILVASSDNVSNAGFRYVFDFGSFQVNVQPNAADKGILDLAPIFREKLQHNPSFLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGIDKYAMSERTNETHKWSEAPARGLSSDWVYIPTRVSDWGVIYAPSATALLADSDFDIAVITSYDNTDTIIDTIMLSIADNPSIVNVVGAFYQNVAATGIDLTSAKYYTIQFGKEITFPIYSPSSRLYCFYLVADDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNTSTFGFNTYDRGTTDRYVTTTKGLQINSDWVSVGEFELLQTLCRSNDVFIINDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0105097_100007486	F049635	GGAGG	MNKAIYKTPFGRLVKSQFKTMHNFKNVLRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*