Scaffold Ga0105097_10000520

Overview

Basic Information

• Taxon OID: 3300009169
• Scaffold ID: Ga0105097_10000520
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17515
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_1000052010	F097281	N/A	MNKQVTPKVTPVNLKEQNAAHTFRVTIRDREHFYKLVNWLNTNVGKGEDKWTMEGRVLKTLKQGKSVSPKIYIFREDFDPASSLYLSLL*
Ga0105097_1000052019	F071209	AGGA	MDKNTYVPMNELIRDKDTSWTFTHLNIPYYEIAKRGIVIWCVENLEGRWTMLGGNKFGFEDGTDATMFRMQFGLGIS*
Ga0105097_1000052024	F055453	N/A	MKIKDILNESSTDVVARFYKEASQSYDKFYNPEDVKYKEKNAKYYDDHFKQWFNEEVVPVFTKPVDKPQPEYNVLPKDGKLQSPGYRGLQYALAGAGLPYNHKVQRYEPNASRMLASQTMDAVRNNNSQ*