Scaffold Ga0105104_10006721

Overview

Basic Information

• Taxon OID: 3300009168
• Scaffold ID: Ga0105104_10006721
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7680
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004784	Metagenome / Metatranscriptome	423	Y
F096823	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105104_100067215	F096823	N/A	MKEALTFLMMTIMMVAVTTIISQTHEVYAENKAKDLCSQYDGEWNNGKCKIKNDEDKTDYEDELCDDPKDTKKYPKICKDNSD*
Ga0105104_100067216	F004784	N/A	MEDNKLKFVVHGRKEGDKFILDGITNYILQNLDSFDDKTIIVTFEKPVTNTIKLDNGDLFN*