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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009167 Open in IMG/M |
| Scaffold ID | Ga0113563_10480783 Open in IMG/M |
| Source Dataset Name | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1349 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie, Old Woman Creek | |||||||
| Coordinates | Lat. (o) | 41.384 | Long. (o) | -82.513 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039197 | Metagenome | 164 | Y |
| F067248 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0113563_104807831 | F039197 | GGA | MKSVTALQKKANPAVKGAWVTLGIPFDVPMIDEKAEGIIDVEALIMTTLLVMEKDRMVTDLPAWLGRFSSLVNHQKLKTMFNMIPSRHQSVILENLNQTPLAAASKSFRSILNLELPSDAVMKTVQMRAKKLNTIENVAEASVMIRNRLRYGTGFRADIIALTNIKGFGMKGTQLAKVLCTNDSTVSRILSDLRACGFLDHDNERIGPVEPYTGMFISSQSIWNLCEMMDAAKFASQELKRGALESLNLRHDAFGREVIAELNP* |
| Ga0113563_104807832 | F067248 | N/A | LADWLRVKYPGEHFELIVAGGAAMILEGFKGQTTDIDLLSPKVLPDSIKRGIAHVGRVKKLGTEWLNTSLANMLTTSARSVRLPKYFSEISRTLKVGDNLKIGLISRQALISLKLYATIPSYRKHTEDLSNLRPSKREITEALRFVMSIDDSDPRKGDLRIVMKELGFDFDEIRYSSAKKGKPRR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |