Scaffold Ga0105102_10004384

Overview

Basic Information

• Taxon OID: 3300009165
• Scaffold ID: Ga0105102_10004384
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5069
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F062756	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105102_100043841	F062756	N/A	KRLAPVVWESLRDADQPEEQPSIEVKAKATDIDERAELLARLELMTQL*
Ga0105102_100043846	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTTVFGDGVRTAEAKDVAELGAVMALYGSKAVAAGVSASVSSVLAFLTMPFKGVEASALKVGK*
Ga0105102_100043847	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIEDDNGDVLGTFGVDGTSVNQWWVMQDEAFQYGIVQQFAVIMAQQIANGDAE*