Scaffold Ga0114975_10038704

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10038704
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2837
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029678	Metagenome	187	Y
F037608	Metagenome / Metatranscriptome	167	Y
F068601	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1003870412	F037608	GAGG	MSNVIAFHPRKPDLVLLYEVVGEDGKAEWGGNSEREALAWIASSPTATRILVSGWESEDEDAHLVGQPLDITTIVREASR*
Ga0114975_1003870414	F068601	GGA	MRTGESQENIVKLSDIREGKLRALSPYGPVKAGLTTLPRINEEVRLMELLNSLENVVHDLNYKSFTVYDTLNTAIQGVRVALSHTTIDEAGTDV*
Ga0114975_100387049	F029678	GAGG	MSKVKGFSIYDQETGKKFATLPLTIPIGATVEAYEKAGHKVRWGWEEGESDE*