Scaffold Ga0114975

Basic Information
Taxon OID	3300009164 Open in IMG/M
Scaffold ID	Ga0114975_10031799 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009164 Open in IMG/M

Scaffold ID

Ga0114975_10031799 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3158
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3158

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_100317991	F058146	AGGA	MKLSQLTAKPQLIDIHIDDEDTIKEFGEPIEFWTWDRQPMDTFMKLASADHNNVIGLIGIVRTLILDEKGKEILKDDAMLPTHVLMKAISKVTEILGK*
Ga0114975_100317992	F003807	N/A	MTNQVWYKTNEEKLRSLIADEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEQLNENE
Ga0114975_100317994	F058142	AGGAG	MAEVTYSVLNEPYVKQSQIVAVTRRDIPTAWNIPIFDDFPSDSEVVRYGIYISDVHLVERNPHQLGIQYCGAIYHAYDEFNITYISYQDDPYNVAVNSIIANLVTAVKDDGVQLMDGYFERDFEQVRTYGPTQAEKHTWTFRMLRMEFNT*
Ga0114975_100317995	F002260	AGGA	MSVPYQRISNATVEDIQFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPDGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF*
Ga0114975_100317996	F011761	N/A	SNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNPNGTGGTYGAGNAVVQNPSLGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTLAFQSFKATPGNLYYSPTPVDGFARVLELGAMELAESGTNVTVAAGGTTGFSAASVLDLVRLVKQNFKVARMPGTPVIVLDSNGDAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLTTGRIESVYGCMIMFTTFLTTASRTFLGSGPFSCLIGGYMGDSAIFTVMKEGLQLKTGEIPGGLQIWLTGVGYFGSGVGDLRRGGAINIIQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114975_10031799

Overview

Ecosystem & Geography

Associated Families

Sequences